LC peak smoothing (experimental) has been implemented.
And it is now possible to open a particular MB5 from the command-line or a .BAT file. Precede the full path to the MB5 file with (excluding the quotes): "-bin"
MSQuant: v2.0b3. Download (11.2 MB).
Smoothing of LC peaks. The quantitation values for peptides and protein are recalculated. Use menu Quantitation/"Smooth LC profiles and do LC peak detection, etc." in the Quantitation window
The program no longer quits if no PTM scoring, MS3 scoring, quantiation or export are specified from the command-line. Instead it stays open with the specified opened MB5 file. This allows for fewer manual steps if the same MB5 file is worked on for a long time. E.g. the following can be put in a Shortcut (your paths may vary. Note that the full path to the MB5 file has been quoted as it contains spaces):
D:\dproj\MSQall\MSQuant\bin\MSQuant.exe -bin "L:\tempCollection\temp20,JBquantTrouble\2010-01-20a,JAB,Quantitation Ratio Oddness\F091498.dat,QUANTMODE_v2.2 DimethylTag,SDUP,quantified q9276,dims defined.mb5"
Note that it does not open immediately, wait 5-10 seconds. This interval may be shortend in a future version.
- Bug fixes:
Posted by Peter Mortensen on 2010-02-22T15:42:00+0100